Cancer3.AI › AI in Oncology › Datasets › CPTAC — Clinical Proteomic Tumor Analysis Consortium
Registry / portal Free registration open (proteomics via PDC) / controlled (raw sequencing via dbGaP)

CPTAC — Clinical Proteomic Tumor Analysis Consortium

Proteogenomic companion to TCGA: the largest public set where protein-level measurements, genomics and images exist for the same tumours.

Dataset site { } JSON

At a glance

ProviderNCI Office of Cancer Clinical Proteomics Research
AccessFree registration
Licenceopen (proteomics via PDC) / controlled (raw sequencing via dbGaP)
patients1 000
Size notes10+ tumour types with proteogenomic profiling (proteome, phosphoproteome) on genomically characterised cases; images in TCIA
FormatsTSV, SVS, DICOM, MAF
Data typeProteomicsGenomics (DNA)Transcriptomics (RNA)Histopathology (WSI)CT
TaskClassificationPrognosisGene expression
CancerPan-cancer

Labels and annotations

Mass-spectrometry proteomics and phosphoproteomics with matched genomics, clinical annotations and pathology/radiology images (TCIA CPTAC collections).

Details

Not yet documented on this card.

Models trained or evaluated on it

Sources

  1. CPTAC programme site
  2. Proteomic Data Commons

This page is educational — it is not medical advice and does not replace consultation with an oncologist. Diagnostic and treatment decisions are made solely by specialist physicians.