{"access":"registration","annotations":"Mass-spectrometry proteomics and phosphoproteomics with matched genomics, clinical annotations and pathology/radiology images (TCIA CPTAC collections).","article":null,"cancer_slugs":["pan-cancer"],"details":"","doi":null,"formats":["TSV","SVS","DICOM","MAF"],"hf":null,"huggingface":null,"kind":"registry","license":"open (proteomics via PDC) / controlled (raw sequencing via dbGaP)","modalities":["proteomics","genomics","transcriptomics","histopathology","radiology-ct"],"models":[{"name":"Phikon-v2","note":"","role":"pretraining","slug":"phikon-v2"},{"name":"Phikon-v2","note":"","role":"training","slug":"phikon-v2"}],"name":"CPTAC \u2014 Clinical Proteomic Tumor Analysis Consortium","page":"/ai-oncology/datasets/cptac","provider":"NCI Office of Cancer Clinical Proteomics Research","size":{"notes_en":"10+ tumour types with proteogenomic profiling (proteome, phosphoproteome) on genomically characterised cases; images in TCIA","notes_pl":"10+ typ\u00f3w guz\u00f3w z profilowaniem proteogenomicznym (proteom, fosfoproteom) na przypadkach scharakteryzowanych genomowo; obrazy w TCIA","patients":1000},"slug":"cptac","sources":[{"label":"CPTAC programme site","url":"https://proteomics.cancer.gov/programs/cptac"},{"label":"Proteomic Data Commons","url":"https://pdc.cancer.gov/"}],"summary":"Proteogenomic companion to TCGA: the largest public set where protein-level measurements, genomics and images exist for the same tumours.","tasks":["classification","prognosis","gene-expression"],"url":"https://proteomics.cancer.gov/programs/cptac","verified_at":"2026-09-05T22:25:58.828625"}